PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_22095-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 933aa MW: 100826 Da PI: 6.0504

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_22095-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ L+rH r+H TRIUR3_22095-P1 64 KCAKCPREFCSSVALRRHTRVH 85 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.014	63	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.40.50.720	8.8E-47	643	905	IPR016040	NAD(P)-binding domain
SuperFamily	SSF51735	3.18E-44	643	909	IPR016040	NAD(P)-binding domain
CDD	cd05327	3.82E-91	644	925	No hit	No description
PRINTS	PR00081	2.9E-14	646	663	IPR002347	Short-chain dehydrogenase/reductase SDR
Pfam	PF00106	1.8E-18	646	773	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	2.9E-14	702	713	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	2.9E-14	752	768	IPR002347	Short-chain dehydrogenase/reductase SDR
PRINTS	PR00081	2.9E-14	841	858	IPR002347	Short-chain dehydrogenase/reductase SDR

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 933 aa Download sequence Send to blast
MAASGSGSGS GQIQPLKIPD AVVALAQAAA KANNSSNSAA AADATDKYLP GWPLFSPPKM 60 QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL 120 EGMAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI 180 MLDEASENTF LCTNAADAAF VQKFLFDGEV EKVATELKNV VACTSYILEQ KLVEAWSADK 240 AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM VQLPEVVDGA 300 TSSPGIQSLE AVSGPGLHEQ EDPQHLQLST PVPSDDNGCN GEDANCGSGQ EIDTAAVFRE 360 QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT NKSKTWAWKV 420 RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD SKDNHPAPPE 480 SDSNTLNDPV AEVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG SVCGNVESAE 540 SVGLERGTMM SSGFGGYRDA LLTNKKTLAT NSYYSFIEEE IVKALPGDNV GFNVKDIDRH 600 PFHSWEKRRD QEKMLARILS RKGASGFSWA STADQVTAGV SAAGLTAIVT GASSGIGAET 660 ARVLAARGAH VVMAVRNLSA AVDLSSLDSV RKFAADFAAR GLPLNILINN AGVMATPFSL 720 SKDGIEMQFA TNHVGHFLLT NLLLETMKKT SRESSVEGRI VNVSSEAHRF AYKEGIRFAK 780 LNDKEEYSTI AAYGQSKLAN ILHANELARR FKFFISMIYS FVSAQVSQIM IQYFVEQEEG 840 VNMTANSLHP GVIITNLLRH HSILDVVHRT LGKLVLKNAK QGAATQCYMA LHPGAKGVSG 900 RYWSDSNMYE PSEKAKDAEL GKKLWDYTLD LVA

Sequence ? help Back to Top

Protein Sequence Length: 933 aa Download sequence Send to blast

MAASGSGSGS GQIQPLKIPD AVVALAQAAA KANNSSNSAA AADATDKYLP GWPLFSPPKM  60
QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL  120
EGMAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI  180
MLDEASENTF LCTNAADAAF VQKFLFDGEV EKVATELKNV VACTSYILEQ KLVEAWSADK  240
AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM VQLPEVVDGA  300
TSSPGIQSLE AVSGPGLHEQ EDPQHLQLST PVPSDDNGCN GEDANCGSGQ EIDTAAVFRE  360
QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT NKSKTWAWKV  420
RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD SKDNHPAPPE  480
SDSNTLNDPV AEVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG SVCGNVESAE  540
SVGLERGTMM SSGFGGYRDA LLTNKKTLAT NSYYSFIEEE IVKALPGDNV GFNVKDIDRH  600
PFHSWEKRRD QEKMLARILS RKGASGFSWA STADQVTAGV SAAGLTAIVT GASSGIGAET  660
ARVLAARGAH VVMAVRNLSA AVDLSSLDSV RKFAADFAAR GLPLNILINN AGVMATPFSL  720
SKDGIEMQFA TNHVGHFLLT NLLLETMKKT SRESSVEGRI VNVSSEAHRF AYKEGIRFAK  780
LNDKEEYSTI AAYGQSKLAN ILHANELARR FKFFISMIYS FVSAQVSQIM IQYFVEQEEG  840
VNMTANSLHP GVIITNLLRH HSILDVVHRT LGKLVLKNAK QGAATQCYMA LHPGAKGVSG  900
RYWSDSNMYE PSEKAKDAEL GKKLWDYTLD LVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3rd5_A	6e-34	646	925	18	278	MYPAA.01249.C
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	266	273	ERKRMKKL
2	271	281	KKLRQKEQRLK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355914	0.0	AK355914.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027M18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310424.1	0.0	uncharacterized protein LOC100827514
TrEMBL	M7Z8M4	0.0	M7Z8M4_TRIUA; WW domain-containing oxidoreductase
STRING	TRIUR3_22095-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-76	C2H2-like zinc finger protein