PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22272-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 470aa    MW: 50963.8 Da    PI: 10.5723
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22272-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-19387421135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+ kTp+WR gp+g ktLCnaCG+++++ +l
  TRIUR3_22272-P1 387 CSHCGVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 421
                      *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-18381435IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.084381417IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.19E-13384444No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15385419IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.85E-13386428No hitNo description
PfamPF003203.7E-17387421IPR000679Zinc finger, GATA-type
PROSITE patternPS003440387412IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MKLSLGLNWI KSSRDVTELN VCRSRRCRAF GTWIDWIAKT FDYINRITKC FRFWSTRGGS  60
FRSTHLSIGA VAGLVRLFYG ALARRLTDYL LQEVLSGFGD GGAMTAEKEM EWSNVIEGEQ  120
SGRKREGGKQ RNSAFVADTD FGSHSMTHQT LISSAPAAAA FSSSPHLLHA SLPTLSPSSS  180
PAASAMSSSS FAHHHGSLQV ERMSALRSSL RPCEAAEEAH DAEELEWVSR IMDDSQAELP  240
PPAQLPAPAA WPPQHRRPQE SAVPAVDPMR TPTICALSTE ALVPVRSKKR SKRSRGTTVW  300
SLSGASISDS ASSSATSSSC SSSASLSSFF LMDSPTFNLL DEPPRTKSKN KKSKHKLKKR  360
GRKPKSHLPP QLSGGAASPP AQGDRRCSHC GVQKTPQWRA GPEGAKTLCN ACGVRFKSGR  420
LLPEYRPACS PTFVGNLHSN SHRKVLEMRR KKDPVPVAIE AAAAPAVASF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659070.0AK365907.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038N10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199372.11e-127GATA transcription factor 5-like
TrEMBLM8ANF30.0M8ANF3_TRIUA; GATA transcription factor 5
STRINGTRIUR3_22272-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-38GATA transcription factor 5