PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22279-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 239aa    MW: 27552.4 Da    PI: 10.6273
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22279-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP52.39.4e-17631182371
          E2F_TDP  23 givtlnevakeLvse........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++ l++v+++  ++        d+kn+rRR+YD++NVL al++i+k ek+eirw+g
  TRIUR3_22279-P1  63 TTTPLSQVCEKVEAKgrttynefDEKNIRRRVYDAFNVLIALRVIAK-EKKEIRWMG 118
                      55666666666633366677667999*********************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.4E-1447118IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.1E-1360118IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.18E-1169119IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.1E-1884123IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144583.63E-27123222IPR014889Transcription factor DP, C-terminal
SMARTSM011388.9E-25125238IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.45E-32125235No hitNo description
PfamPF087812.2E-23126223IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MTRTIWLPGR GQQAWPPHHA AAHPNIATAV RRHQLGINFN CKQLSGNTNE NIRHTTSRAE  60
ASTTTPLSQV CEKVEAKGRT TYNEFDEKNI RRRVYDAFNV LIALRVIAKE KKEIRWMGLS  120
NYRYEKIKKL EEVRKELVNK IRNKKALLQE IEKQFDDLQN IKLRNQTLES SAENVNGIRL  180
PFVLVKTSRK ARVEIEISDD SKFAHFEFNG APFTLHDDLS ILEGVRRNSI GRAGRATLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B3e-16691191889PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2719170.0AJ271917.1 Triticum sp. mRNA for DP protein (dp gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151361.11e-112transcription factor-like protein DPB
SwissprotQ9FNY28e-46DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM8ABY61e-177M8ABY6_TRIUA; Transcription factor-like protein DPB
STRINGTRIUR3_22279-P11e-178(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-48Transcription factor DP