PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22280-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 333aa    MW: 38520.1 Da    PI: 9.6743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22280-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-09104151348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                       WT eE ++l+++v+++G g+W+++ r+      R + ++k++w++ +
  TRIUR3_22280-P1 104 HWTREEVKKLIRGVRRYGEGRWTKVKRHYFssSVRKPTHLKDKWRNIR 151
                      5****************************9996799*********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.23997155IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-1197151IPR009057Homeodomain-like
SuperFamilySSF466891.64E-1299153IPR009057Homeodomain-like
SMARTSM007171.0E-6101153IPR001005SANT/Myb domain
PfamPF139215.2E-8105151No hitNo description
CDDcd116602.17E-17105152No hitNo description
SuperFamilySSF562192.09E-12191324IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.107.7E-6191327IPR005135Endonuclease/exonuclease/phosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MKPADQVEIW EAILADPLDW LPSSVTIPPP SQVEEYFSYV YGDDDMEINK FAQEPEDGQC  60
HQQYLGEFIL NKNGRCAPQG PRKRRIFPSE SRGKKLHSRK NNEHWTREEV KKLIRGVRRY  120
GEGRWTKVKR HYFSSSVRKP THLKDKWRNI RRACGVPCRS KRKEKAQKTM FRPLDSKSVK  180
EIRRGLADLA KKRFLTESAI EDKLDFIALL ETGRDNFTSQ FLSLTGGIDF DWHCLPPRGQ  240
SGGILLGVKC ETLEVINVVR GDYMVKFRVR SKLDGFRWAL VAVYGAVQPE YKSDFLADLV  300
RICGDEELPI LVGGDFNIIS RKEEKNNDHF DGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-140HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM7YDH00.0M7YDH0_TRIUA; Myb-like protein V
STRINGTRIUR3_22280-P10.0(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-12TRF-like 6