PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22395-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 250aa    MW: 28573.2 Da    PI: 6.1063
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22395-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox437.5e-14841221956
                      HHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  19 Fek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  TRIUR3_22395-P1  84 FHTrRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 122
                      5544789999****************************9 PP
2HD-ZIP_I/II95.17.2e-31831571790
      HD-ZIP_I/II  17 sFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                      +F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++ L+ +ydal+++ e+L++e+ +L+++
  TRIUR3_22395-P1  83 TFHTRRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEQDFAELRGHYDALRARVESLKQEKLTLAAQ 157
                      6777777***************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd092721.33E-26175No hitNo description
SMARTSM003892.9E-671128IPR001356Homeobox domain
PROSITE profilePS5007113.31384124IPR001356Homeobox domain
PfamPF000463.2E-1184122IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-1484130IPR009057Homeodomain-like
SuperFamilySSF466892.82E-1289134IPR009057Homeodomain-like
CDDcd000862.18E-1093125No hitNo description
PRINTSPR000316.1E-795104IPR000047Helix-turn-helix motif
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PRINTSPR000316.1E-7104120IPR000047Helix-turn-helix motif
PfamPF021834.0E-11124165IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
LLQELLCDVH KATLVCCDNV SAVYLSANLV HHRRTKHIEL DIHFVREQVT LGRIRVLRVA  60
TAQQFADVMT KELPASVFEE FSTFHTRRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR  120
WRSKQLEQDF AELRGHYDAL RARVESLKQE KLTLAAQREE LKKKLNERQD QSASCDAAAE  180
VDDKSNNVSS CIVAKDESAA PTADVSDGST PGWYEYDNHL AYGVDLQEPF CATPELWETS  240
WPLVEWNAVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243750.0KT224375.1 Triticum aestivum cultivar RAC875 HDZipI-4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152926.11e-108homeobox-leucine zipper protein HOX24-like
RefseqXP_020173935.11e-108homeobox-leucine zipper protein HOX24-like
SwissprotA2X7U15e-67HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLM7Z5W60.0M7Z5W6_TRIUA; Homeobox-leucine zipper protein HOX24
TrEMBLT1MWL80.0T1MWL8_TRIUA; Uncharacterized protein
STRINGTRIUR3_22395-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-26homeobox 7