PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22432-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 260aa    MW: 28887.3 Da    PI: 8.7938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22432-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-142976148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed +l+  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  TRIUR3_22432-P1 29 KGPWTEQEDMKLAWFVRLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 76
                     79********************************************97 PP
2Myb_DNA-binding57.62.8e-1882126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+++eE+ l vd+++++G++ W++Ia+ m+ gRt++++k++w+++
  TRIUR3_22432-P1  82 RGRMSPEEERLVVDLHARWGNR-WSRIAKAMP-GRTDNEIKNYWRTH 126
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4722676IPR017930Myb domain
SuperFamilySSF466899.98E-2927123IPR009057Homeodomain-like
SMARTSM007171.1E-122878IPR001005SANT/Myb domain
PfamPF002491.4E-132976IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-193082IPR009057Homeodomain-like
CDDcd001673.67E-93176No hitNo description
PROSITE profilePS5129425.02777131IPR017930Myb domain
SMARTSM007173.6E-1681129IPR001005SANT/Myb domain
PfamPF002495.3E-1682126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2383129IPR009057Homeodomain-like
CDDcd001671.14E-1184126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKTKQASKAK AAPSPGKEEE AVAPGGFRKG PWTEQEDMKL AWFVRLFGER RWDFLAKVSG  60
LNRTGKSCRL RWVNYLHPDL KRGRMSPEEE RLVVDLHARW GNRWSRIAKA MPGRTDNEIK  120
NYWRTHTRKL HKDTRASAAS ASTTTSTSMS AASPATTSSS SSSTIDNDNN SHHGHRDQET  180
AASQEQADNQ LLYTAGIGMD SHLLWNDAIM DSYAWGAAVP SMIVPPPSSP VWDYCCSDSL  240
WGIGDDEVEY KKMLAVAGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-26291294103MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-262912958157MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-262912958157MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-26291294103C-Myb DNA-Binding Domain
1msf_C1e-26291294103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2889340.0JF288934.1 Triticum aestivum MYB13-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185558.11e-165transcription factor MYB59-like
SwissprotQ4JL766e-63MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A446P7P20.0A0A446P7P2_TRITD; Uncharacterized protein
TrEMBLG8DUN80.0G8DUN8_WHEAT; MYB13-1
TrEMBLM8B4W10.0M8B4W1_TRIUA; Myb-related protein MYBAS2
STRINGTRIUR3_22432-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-60myb domain protein 59
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]