PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22433-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 170aa    MW: 18222.6 Da    PI: 9.1883
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22433-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.8e-171865249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie k  r+v +skRr+g +KKA+ L vL++aeva + fs+ g+++ +
  TRIUR3_22433-P1 18 RIEQKDARHVCYSKRRAGFFKKASDLAVLTGAEVAALAFSPGGNVFSF 65
                     8*******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-21968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.549969IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-221079IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-131131IPR002100Transcription factor, MADS-box
PfamPF003193.8E-201865IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-133146IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-134667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
VAPNRRRDSG RKKTVVRRIE QKDARHVCYS KRRAGFFKKA SDLAVLTGAE VAALAFSPGG  60
NVFSFGHPSI DSVVERFLAG QGAGAGARGK VAADDRLGEL GTELVEAKKR AERTEEAMAK  120
ERAAGDQIAA WFGPNVGDIG DEDMAAFFAA LMQVKEVVSD RANDVLLEAM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172977.12e-84agamous-like MADS-box protein AGL61
TrEMBLT1MWQ41e-117T1MWQ4_TRIUA; Uncharacterized protein
STRINGTRIUR3_22433-P11e-118(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-22M-type_MADS family protein