PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22484-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 156aa    MW: 18050.5 Da    PI: 10.3456
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22484-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.18.1e-20559256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     rk+ +++k+q  +Le+ F+++++++ ++++ LA++lgL  rqV vWFqNrRa+ k
  TRIUR3_22484-P1  5 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTK 59
                     788899***********************************************98 PP
2HD-ZIP_I/II127.55.9e-41594191
      HD-ZIP_I/II  1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
                     +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  TRIUR3_22484-P1  5 RKKLRLSKDQSAVLEDSFREHPTLNPRQKAALAQQLGLRSRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 94
                     69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.362161IPR001356Homeobox domain
SMARTSM003891.7E-16365IPR001356Homeobox domain
SuperFamilySSF466891.41E-18469IPR009057Homeodomain-like
PfamPF000463.9E-17559IPR001356Homeobox domain
CDDcd000865.23E-14562No hitNo description
Gene3DG3DSA:1.10.10.608.5E-19559IPR009057Homeodomain-like
PRINTSPR000312.3E-63241IPR000047Helix-turn-helix motif
PROSITE patternPS0002703659IPR017970Homeobox, conserved site
PRINTSPR000312.3E-64157IPR000047Helix-turn-helix motif
SMARTSM003404.5E-2561105IPR003106Leucine zipper, homeobox-associated
PfamPF021831.1E-116195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MDGSRKKLRL SKDQSAVLED SFREHPTLNP RQKAALAQQL GLRSRQVEVW FQNRRARTKL  60
KQTEVDCEFL KRCCETLTEE NRRLQKEVQE LRALKLVSPH HYMHMSPPTT LTMCPSCERV  120
SNNNNNNNNN STTADRRNGV EGAICHRPIA VRPQQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139SRKKLRL
25361RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9749801e-153EU974980.1 Zea mays clone 462177 homeobox-leucine zipper protein ATHB-4 mRNA, complete cds.
GenBankKJ7283621e-153KJ728362.1 Zea mays clone pUT6644 HB transcription factor (HB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976428.16e-94homeobox-leucine zipper protein HOX17
SwissprotQ01I239e-87HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBLM7YW931e-112M7YW93_TRIUA; Homeobox-leucine zipper protein HOX17
STRINGTRIUR3_22484-P11e-113(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-70homeobox protein 2