PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22562-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 130aa    MW: 14419.3 Da    PI: 8.4843
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22562-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH50.43.6e-165681126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     +ktelC+ + +tG C+yGd+C+FaHg
  TRIUR3_22562-P1 56 FKTELCNKWEETGACPYGDQCQFAHG 81
                     79***********************9 PP
2zf-CCCH20.21e-0694119126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykte Cr  + +  C+yG rC+F H+
  TRIUR3_22562-P1  94 YKTEVCRMVLNGEVCPYGHRCHFRHS 119
                      9******999966**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.8E-205088IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-115287IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-105582IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.775583IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-135681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-1389119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-990120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.80793121IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-593120IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNQAAPAAAT PAVYNCKPSS QRAYSGLGAD GGKKGEEQKS KQDAAGELDV YNQGMFKTEL  60
CNKWEETGAC PYGDQCQFAH GVSELRPVIR HPRYKTEVCR MVLNGEVCPY GHRCHFRHSL  120
TAAERLLRSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-2356119467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3605441e-162AK360544.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1120C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.11e-81zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-61C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A3B6EIL58e-91A0A3B6EIL5_WHEAT; Uncharacterized protein
TrEMBLA0A446NIW58e-91A0A446NIW5_TRITD; Uncharacterized protein
TrEMBLM7YK182e-93M7YK18_TRIUA; Zinc finger CCCH domain-containing protein 9
STRINGTRIUR3_22562-P13e-94(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.17e-48C3H family protein