PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_22849-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 102aa    MW: 11433 Da    PI: 10.7587
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_22849-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.85e-076284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++Cgk F r  nL+ H r H
  TRIUR3_22849-P1 62 FVCEICGKGFQRDQNLQLHRRGH 84
                     89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.35E-66085No hitNo description
Gene3DG3DSA:3.30.160.601.5E-66284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6146284IPR007087Zinc finger, C2H2
PfamPF121717.9E-56284IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MASEAMPNPF APLTNQPQQQ PPSHEHPAAP PPKKKRNLPG TPDPDAEVIA LSPRTLMATN  60
RFVCEICGKG FQRDQNLQLH RRGHNLPWKL RQRSGKEPRE SG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703069e-78HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191248.14e-62zinc finger protein NUTCRACKER-like
SwissprotQ9LVQ72e-38IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A3B6EG522e-64A0A3B6EG52_WHEAT; Uncharacterized protein
TrEMBLA0A446NC782e-64A0A446NC78_TRITD; Uncharacterized protein
TrEMBLM8A6K51e-68M8A6K5_TRIUA; Zinc finger protein MAGPIE
STRINGTRIUR3_22849-P12e-69(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2461645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.12e-40C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]