PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23045-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 347aa    MW: 38220.7 Da    PI: 6.0024
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23045-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.72.3e-114389349
                     --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     i ++  r vtf kRr g++K    LS+ ++a++av++  ++ +++ +
  TRIUR3_23045-P1 43 IHDEKERDVTFLKRRGGLFKSIADLSTVTGARIAVVLETENETMHSF 89
                     88999***************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.4E-83492IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-53555IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.8443693IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.27E-1337103IPR002100Transcription factor, MADS-box
PfamPF003194.8E-154389IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-55570IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-57091IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSLVNGFSKS QAFCRSFWFL FLVVSFFVLV GFSMPRRSAI AYIHDEKERD VTFLKRRGGL  60
FKSIADLSTV TGARIAVVLE TENETMHSFG TPSADPIADA FLSGAPLAVP LDDEATTARI  120
SQLQSEVARL DMNCMEYKKN QLSIERMKQI QEQCPGMAAN HIFSKEEDLS PGDLNSLSNE  180
ISRVHEDIGH RLPQLHHGHR AMTGGASTKQ NMLPSSGPPS DRMRTTPSSV HSLWDHHLPQ  240
HQMHSSPLPS PPGHIMAPGF SQNDANSNST SRYNLAVPPL LVYSGGNDFT VNDPFVYESW  300
GYALSDQPFR NEYIEKDASL GYNGADVGQS SMGNDGWVDK PPESSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185126.10.0pheromone receptor transcription factor-like
TrEMBLM7ZXR70.0M7ZXR7_TRIUA; Agamous-like MADS-box protein AGL62
STRINGTRIUR3_23045-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-11AGAMOUS-like 62