PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23073-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 204aa MW: 22493.8 Da PI: 6.4012

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23073-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.2	1.4e-08	76	113	3	40
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS- CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLt 40 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ TRIUR3_23073-P1 76 KKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQ 113 5678********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.1E-7	63	113	IPR009057	Homeodomain-like
SMART	SM00389	0.002	74	190	IPR001356	Homeobox domain
CDD	cd00086	3.28E-6	76	113	No hit	No description
Pfam	PF00046	5.7E-6	76	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.5E-8	77	113	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MEPGRLIFNT SGSGNGQMLF MDCGAGGIAG AAGMFHRGVR PVLGGMEEGR GVKRPFFTSP 60 DDMLEEEYYD EQLPEKKRRL TPEQVHLLER SFEEENKLEP ERKTELARKL GLQAPPGGWR 120 SGPSPAAPGG RQRRWSATST ASRRPSTPSA PTTTRSSRTT TGSGHSYYPD DAAVFFAAAQ 180 GHGHHHTDDD DQQDDGQISY WMWN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK364006	0.0	AK364006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020M04.
GenBank	AK364258	0.0	AK364258.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023C19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020155642.1	4e-66	homeobox-leucine zipper protein HOX16-like
Swissprot	Q6YWR4	2e-46	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	M7ZM73	1e-149	M7ZM73_TRIUA; Homeobox-leucine zipper protein HOX16
STRING	TRIUR3_23073-P1	1e-150	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2609	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-23	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]