PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23095-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 806aa    MW: 92924.9 Da    PI: 8.0765
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23095-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.31.4e-19180261291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fY++YA  +GF  ++++++++      +k++  C+++gk+++ ++  +++r+ ++ +rt+C+ak+ vk++ +g+we +++++eHnH+l+p
  TRIUR3_23095-P1 180 FYSTYALLTGFVAKRNSNYRR------KKYHIECNRSGKPTPARNP-NRKRKINSFERTNCQAKVIVKLT-KGQWEFATVRNEHNHPLSP 261
                      9****************9999......5789***********9998.9**********************.9***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.8E-17180261IPR004330FAR1 DNA binding domain
PfamPF105512.8E-21401485IPR018289MULE transposase domain
PROSITE profilePS509668.493684720IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MVTELDKPGA ETADNSTKKR RTCRVADDEG SSVPELHRKK ASKNAAETMS SASELSKEPV  60
GKQSMTEERP QPTGDSYEEL SSDSIEKNTD GILADEADKE TNSVDHSLQQ AKEQNQLHDN  120
VENNEMVNRN PSESDSDSSS GSDSDSELGK YFYPKFEELE AARKPEPGMK FQTLEDANGF  180
YSTYALLTGF VAKRNSNYRR KKYHIECNRS GKPTPARNPN RKRKINSFER TNCQAKVIVK  240
LTKGQWEFAT VRNEHNHPLS PNPSLARFFL SQKHMSSEEK SFLKVLQQSK IPPNKILRIF  300
RRMRSSFGNI SFKKQDPVSS VRSSSENIPS KKKDPISLQC TEQRKTENSD VESALKHFKE  360
LELRNPSFFY IKQTDEDNIV RSIFWTDARS RMDYDIFGDF ISVDTTYTTN RHNLPVATII  420
GINNHGRTLL LGCALLRDGK AETFKWMFQT LLQVMGGKIS GSIITNQDEP LGRAIAEVLP  480
QVRLRFWKCD VMGKAHERIA AFMAARGNIK LELDSLVDNS LTEMEFEEGW SSLIERYDAS  540
KNEYLQFMWR IRKIWAPVYF RQDFYPFAES LGRSEGMNIV LFRNYVLPKD RIEKFIERYE  600
EIQKTTLKTD DEDRRQAGTV PSCFSLQPIE KHASTIYTRQ IFLKVQRELL HSTAFDVHVV  660
KKGSVYRLER VFNYENPEFD RNAFEVFVDP VSNTFICQCA KFARDRLLCC HIFRLFTQLG  720
INEIPAQYIV PRWTDKFKEE KAKQYTEKCL EKADSTARYE MLMSKMADLS KKICSDGTKC  780
NTFMLEFDSI QEKLLATEGE NPRNND
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188688.10.0protein FAR1-RELATED SEQUENCE 9-like
TrEMBLT1MYH50.0T1MYH5_TRIUA; Uncharacterized protein
STRINGTRIUR3_23095-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-72FAR1-related sequence 5