PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23102-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family SBP
Protein Properties Length: 141aa    MW: 15489.4 Da    PI: 10.5931
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23102-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1352.4e-4234111178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cq+e+C adlseak+yhrrhkvCe+h+ka+vv+v+gl+qrfCqqCsrfhel efD++krsCrrrLa+hnerrrk++a
  TRIUR3_23102-P1  34 ICQAERCGADLSEAKRYHRRHKVCEAHAKAAVVVVAGLRQRFCQQCSRFHELLEFDDQKRSCRRRLAGHNERRRKSSA 111
                      5**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114131.69332109IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.0E-333396IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.57E-3934112IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3135108IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MDRKDKSRKS SSAASMAALA AAAAGGGVAR ADGICQAERC GADLSEAKRY HRRHKVCEAH  60
AKAAVVVVAG LRQRFCQQCS RFHELLEFDD QKRSCRRRLA GHNERRRKSS AEANGGDGCR  120
HADQDGRTHP GNPPLNHFQI R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-36341081084squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0916721e-102FP091672.1 Phyllostachys edulis cDNA clone: bphylf033o15, full insert sequence.
GenBankFP0944781e-102FP094478.1 Phyllostachys edulis cDNA clone: bphyst005i03, full insert sequence.
GenBankFP0966261e-102FP096626.1 Phyllostachys edulis cDNA clone: bphylf027p18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560169.31e-66squamosa promoter-binding-like protein 13
SwissprotQ6Z4612e-50SPL13_ORYSJ; Squamosa promoter-binding-like protein 13
TrEMBLM8A6314e-96M8A631_TRIUA; Squamosa promoter-binding-like protein 13
STRINGTRIUR3_23102-P16e-97(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85243248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.24e-30squamosa promoter binding protein-like 4