PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23238-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 296aa    MW: 32256.2 Da    PI: 7.9239
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23238-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.8e-11229253126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +   G C+yG+rC+FaHg
  TRIUR3_23238-P1 229 QKTELCNKWEG-GACSYGGRCRFAHG 253
                      69*******98.*************9 PP
2zf-CCCH18.92.7e-06266292127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt +C+ f++   C+yG rC+F H+p
  TRIUR3_23238-P1 266 YKTLPCQMFSAASGCPYGHRCHFRHSP 292
                      9************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.0E-13225260IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976228255IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7228254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-7229258IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8229253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-10261292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-7262291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709265293IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-4265292IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGELGYLSP AASSCVSSEG FGSSPREKLL DSTPSSHVSD GRSKGGLLRS PTWGPSTTGT  60
QLHSPSSCVS EGRHVSPLRM SAEQASEVRE AERLLRAIAD RYDDCFLRLR DATAEVADLR  120
LERLRLRAEN THLSLLLEEL EADQGKRAIA PAPTPPPKPT EEVAARGGAP KSISIRSKCY  180
LSQAKQPRGE AEAQRLRVRP PPAIEQAGED EANGDGEVVE LEAYRQGTQK TELCNKWEGG  240
ACSYGGRCRF AHGLQEMRPV IRHPRYKTLP CQMFSAASGC PYGHRCHFRH SPAPTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A2e-172302931175Tristetraproline
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186683e-80AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372673e-80AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149593e-80AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126113e-80CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.11e-180putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN81e-87C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLT1MYW00.0T1MYW0_TRIUA; Uncharacterized protein
STRINGTRIUR3_23238-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-38C3H family protein