PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23258-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GATA
Protein Properties Length: 241aa    MW: 26472.1 Da    PI: 9.8832
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23258-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.63.5e-13147173935
             GATA   9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      Tp +Rrgp g++tLCnaCGl+++ kg+
  TRIUR3_23258-P1 147 TPAMRRGPAGPRTLCNACGLMWANKGT 173
                      9***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062038.8E-1673113IPR010402CCT domain
PROSITE profilePS5101713.35473115IPR010402CCT domain
SMARTSM004016.9E-6137185IPR000679Zinc finger, GATA-type
CDDcd002023.06E-11143183No hitNo description
SuperFamilySSF577161.38E-7146185No hitNo description
Gene3DG3DSA:3.30.50.105.8E-11146175IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.7E-11147173IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MEGPTPQNYN TTLISARHHR ERRLWTYHIT FQGVIQVQAA LLVLGGCEVP PGLVSMAGPT  60
AYGEKSTTVA AKRVASLMRF REKRKERCFD KKIRYGVRKE VAQKMKRRKG QFAGRADFGD  120
AASSSAACVS AADGEDDHFR ESHSRLTPAM RRGPAGPRTL CNACGLMWAN KGTLRSPLNA  180
PKMTVQHPAN LSKMDSVDDD KAIVCAEPNH TTVKMDSGMS PEQEQKPELR PATEGDSMAD  240
S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4238710.0EF423871.1 Triticum aestivum GATA-type zinc finger protein (ZF001) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187640.11e-137GATA transcription factor 19-like
SwissprotQ0DNU11e-111GAT19_ORYSJ; GATA transcription factor 19
TrEMBLM7YI930.0M7YI93_TRIUA; GATA transcription factor 28
STRINGTRIUR3_23258-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.26e-34ZIM-LIKE 2