PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_23381-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 423aa    MW: 44959.8 Da    PI: 7.333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_23381-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-053133511255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  TRIUR3_23381-P1 313 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 351
                      7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.039301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-11311363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.36E-5311355No hitNo description
Gene3DG3DSA:4.10.280.108.7E-9315358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MASSSSSSDL SADHRLLQDD LPWPSPSSMP PPLAPALHHA VGGNHHQWSQ PLMLEQLSSD  60
ELEALLSAQV HQHHSHSQLL AAPLTTNPHH QLSSLLMMQE LGFQWSSSCG AADGDSNETA  120
QDAVKEDAEL PGPLVLPRPS SSSSIAYNDD MAVDVLPSVN VSRLQKIPCP VAAGPFGGRA  180
EATLEMLASA KFCKSLLGCS QASSTVLLHN GGGTAPLLGM GGHHVAYGPP PPVHRLQGPS  240
SILHTYNKMG VPAALLSGNG SALQAATGRS SGGGGLHDEQ QLQMLEVSSK KKPRLLHSRP  300
ATNNNILPSF KVRKEKLGDR IAALQQLVSP FGKTDTASVL MEAIGYIKFL QDQVETLSGP  360
YMRSAKHKKA RTTQQRGPSD TGDQKEEAKV DLRSRGLCLV PLACTSYVTN ENGIWAPPNF  420
RGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153231.10.0uncharacterized protein LOC109738546
TrEMBLT1MZ950.0T1MZ95_TRIUA; Uncharacterized protein
STRINGTRIUR3_23381-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-41bHLH family protein