PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_23877-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 194aa MW: 20968.4 Da PI: 6.3919

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_23877-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	85	6.8e-27	32	90	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s gC+++k vers p v++itY +H h+ TRIUR3_23877-P1 32 SDLWAWRKYGQKPIKGSPYPRGYYKCSSMkGCMARKLVERSPAKPGVLVITYMADHCHP 90 799*********************9988*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	29.574	26	92	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	6.3E-27	26	92	IPR003657	WRKY domain
SuperFamily	SSF118290	3.01E-24	29	92	IPR003657	WRKY domain
SMART	SM00774	3.0E-31	31	91	IPR003657	WRKY domain
Pfam	PF03106	3.6E-22	33	90	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MRSSTPRPKR SKKSQLKKVV CEVPVADGGV SSDLWAWRKY GQKPIKGSPY PRGYYKCSSM 60 KGCMARKLVE RSPAKPGVLV ITYMADHCHP VPTQINALAG TTRHKTTPAD GHAGTTTTTS 120 PKSHGDAHEA VRCDDESNET SSMAVDGATE DAAGDDGGEF WPTELDLDEL LAPVDGDLDH 180 VFDEDDALGR RLSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	13	93	2	80	Disease resistance protein RRS1
5w3x_D	1e-20	13	93	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368513	0.0	AK368513.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2075A10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174842.1	1e-135	WRKY transcription factor 22-like
Swissprot	Q9FLX8	4e-38	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A3B6EGH7	1e-139	A0A3B6EGH7_WHEAT; Uncharacterized protein
TrEMBL	A0A446NIF3	1e-139	A0A446NIF3_TRITD; Uncharacterized protein
TrEMBL	M7ZTJ3	1e-141	M7ZTJ3_TRIUA; Putative WRKY transcription factor 27
STRING	TRIUR3_23877-P1	1e-142	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4279	30	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-38	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]