PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24476-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 178aa    MW: 19532.2 Da    PI: 4.7549
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24476-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind80.42.7e-251371260
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
     HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                     Fl+k+y +++d+e++++isw+e+g++fvv+ + ef++++Lpk FkhsnfaSFvRQLn+Y
  TRIUR3_24476-P1 13 FLTKTYAMVDDPETDDTISWNESGTAFVVWRRAEFERDLLPKNFKHSNFASFVRQLNTY 71
                     9********************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.4E-27977IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-259139IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-221171IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.0E-211371IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-141336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-145163IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.2E-146476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MASPALGAGT PPFLTKTYAM VDDPETDDTI SWNESGTAFV VWRRAEFERD LLPKNFKHSN  60
FASFVRQLNT YVRSVSAHPP LSGWFGAKPM LFGVAIGSKR SREDGHGGGD EGNGAEEDGE  120
DDEEEQEHDE DDERHAARRE QGKAMRTERS DLNVLSLSVR AAAAARPDGG SRDRSGNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A8e-19771165HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A8e-19771165HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9536241e-132EU953624.1 Zea mays clone 1440437 heat shock factor protein 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152813.18e-45heat stress transcription factor B-2a-like
TrEMBLM7YIA61e-127M7YIA6_TRIUA; Heat stress transcription factor B-2a
STRINGTRIUR3_24476-P11e-128(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-28heat shock factor 4