PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24573-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 917aa    MW: 102111 Da    PI: 7.7342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24573-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-0797131440
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 
                      W ++E   +++a +++G++ Wk+I++ +g  ++++ +
  TRIUR3_24573-P1  97 WNKDELMHFYEAYRRHGKN-WKKISAVVG-SKSAETV 131
                      *****************99.*********.9998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.71792143IPR017884SANT domain
SuperFamilySSF466893.66E-996141IPR009057Homeodomain-like
PfamPF002491.4E-597132IPR001005SANT/Myb domain
CDDcd001675.62E-497129No hitNo description
SMARTSM011353.0E-37538639IPR033471DIRP domain
PfamPF065848.4E-31538638IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 917 aa     Download sequence    Send to blast
MGLPPAAGAS PAGISAVLSI CIINYCILRL LFWLAAILGG LNSRTISMGP AKGSRTIHKI  60
TIKRHEDRQH HEDPTSSSNV KLKISQKRKR PDLDPHWNKD ELMHFYEAYR RHGKNWKKIS  120
AVVGSKSAET VEALYYVHRT FLSLPEREGT ARGFIALAAG HDNALESPSH RKTDQMVRSS  180
GKGRRRGEAA WQKENAAPNP HNAFTDQEMR IAGFTSSFKK RYHGGKYISR HPVRKRTPRV  240
PVLLPLDINA TIKANEEINN DGSSPDGSSG ITEAKVVQGQ TFLEIKGTED TEISQSQQHL  300
NLKKRRIQQS MDEGQTSKVE PGATMVAKKE GHNLSDYERL SRLFSPEEMM VLDVLESLVT  360
VPNETSQAKI NSPSGTCGKR ISASSNTQEE GLSPVDQSKQ TKQDSDSSAS EERKKRRKKL  420
PDEEVLAEEQ ISSGNTSVIP QACQLDTTEE PSLNSDFEKE AIDIPESTAN ICAEVSPDAP  480
MEIDPQINMS RKSKRKSKVQ CKKNYVFCNE GADNLQAKKL LHCLSSESLR RWCTYEWFYS  540
AVDYPWFMNN EFVNYLNFAK LSHLSRLTRS EWSTIRSSLG KPRRFSNHFL AVEKEKLEDY  600
RQNVRKYYAE LSDGLRDSLP TDLARPFSVG QHVIVRHPST RELADGRVVI MERDCYKVQF  660
DSPDLGVDII KDTDCMPVNW LDNLPDDLKK RSSLSNNAHR KPDFEHIPEL TSKESWGNIM  720
NDISVPESSS SRQASSSVGG ELLPSKSTTI CRSTLLPFHP LQSAADSLQS RGRSNNNSGQ  780
SDELDSHVTA FVQKSLKQAK QMVGEVMQAS YGNGNESGEE ATPCISLDSE STLDDAQLPS  840
TLIENCVATV IAIKDLSEHR HPPAKIAGVL ERAFSMLRPS CPENLAIYSE IESYIAVVKS  900
QILALVPTTS GNAALAM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411419ERKKRRKKL
2412418RKKRRKK
3412419RKKRRKKL
4413417KKRRK
5413418KKRRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753660.0AK375366.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3092F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171718.10.0protein ALWAYS EARLY 3-like
RefseqXP_020171719.10.0protein ALWAYS EARLY 3-like
TrEMBLM7ZLW90.0M7ZLW9_TRIUA; Protein ALWAYS EARLY 2
STRINGTRIUR3_24573-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86963038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-65DNA binding