PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24850-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 247aa    MW: 26720 Da    PI: 6.2563
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24850-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B396.81.4e-305100187
                      EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed++g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ +
  TRIUR3_24850-P1   5 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtpetTTTTGKGVLLNFEDSEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLGAGDSIVFSCS 98 
                      89*************************9987776644455999************************************************965 PP

                      SS CS
               B3  86 gr 87 
                        
  TRIUR3_24850-P1  99 AY 100
                      43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.32E-29395No hitNo description
SuperFamilySSF1019363.53E-303111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-383119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.7195114IPR003340B3 DNA binding domain
SMARTSM010194.4E-225113IPR003340B3 DNA binding domain
PfamPF023622.9E-285100IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MGPLFEKAVT PSDVGKLNRL VVPKQHAEKH FPLKRTPETT TTTGKGVLLN FEDSEGKVWR  60
FRYSYWNSSQ SYVLTKGWSR FVREKGLGAG DSIVFSCSAY GQEKQFFIDC KKNKTMASCP  120
ADGGAAEAVW RRHRRREEGA SGAGGAGVVQ EAMRGTQPAL SCPRLAEGHF PEVNLEIIAA  180
REARGGSESC DVVLHVLEDG VDAGGGAGGD EAVDANHEEE EGEEEVPVAS PLILLRRSLL  240
LCSSVRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-48412313130DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3720821e-154AK372082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2146E06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201133.11e-86AP2/ERF and B3 domain-containing protein Os01g0141000-like
RefseqXP_020201484.11e-86AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ0DXB17e-61Y2641_ORYSJ; B3 domain-containing protein Os02g0764100
TrEMBLT1N3880.0T1N388_TRIUA; Uncharacterized protein
STRINGTRIUR3_24850-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-48related to ABI3/VP1 2