PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_24950-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 189aa    MW: 21939 Da    PI: 11.066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_24950-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B365.96e-2137107167
                      EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                      f+k+ltpsdv+k++rlv+pk++ae++    g + e++  l++ de g+ W+++++y+ +s++yvltkGW++
  TRIUR3_24950-P1  37 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGKPWRFRYSYWTSSQSYVLTKGWSR 107
                      99***************************9555668889******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.4E-2932107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1934107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-1835107No hitNo description
PfamPF023625.4E-1837107IPR003340B3 DNA binding domain
SMARTSM010190.002437134IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE  60
RCFPLGGDSG EKGLLLSFDD EAGKPWRFRY SYWTSSQSYV LTKGWSRRIP VGRRHQELQP  120
SLGTDTPAQA VRREPRLRAR ARGRSRARDA GDVRLRAPEP LRRRVSSSQQ LGQFMKKMTR  180
RSDAMPFFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-3832109380B3 domain-containing transcription factor NGA1
5os9_B8e-3832109380B3 domain-containing transcription factor NGA1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137147RARARGRSRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752771e-155AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174894.14e-76B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI05e-48Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A446R2C71e-138A0A446R2C7_TRITD; Uncharacterized protein
TrEMBLT1N3I11e-138T1N3I1_TRIUA; Uncharacterized protein
STRINGTRIUR3_24950-P11e-138(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.23e-38B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]