PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25064-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 116aa    MW: 13379.3 Da    PI: 10.8393
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25064-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv ++  +G g+W+  ar  g++R +k+c++rw++yl
  TRIUR3_25064-P1 16 KGPWTLEEDLILVGYISHHGEGSWDNLARSAGLNRNGKSCRLRWLNYL 63
                     79*********************************************7 PP
2Myb_DNA-binding51.62.2e-1669112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eEd  + +++ +lG++ W+ Ia++++ gRt++++k++w++
  TRIUR3_25064-P1  69 RGSISPEEDMVIRELHSRLGNK-WAEIAKHLP-GRTDNEVKNYWRT 112
                      7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1851163IPR017930Myb domain
SuperFamilySSF466892.06E-3114110IPR009057Homeodomain-like
SMARTSM007173.1E-121565IPR001005SANT/Myb domain
PfamPF002497.0E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-211769IPR009057Homeodomain-like
CDDcd001674.57E-91863No hitNo description
PROSITE profilePS5129424.59664116IPR017930Myb domain
SMARTSM007172.5E-1468116IPR001005SANT/Myb domain
PfamPF002494.4E-1569112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2470116IPR009057Homeodomain-like
CDDcd001677.28E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MARMMCGRAG EPAVRKGPWT LEEDLILVGY ISHHGEGSWD NLARSAGLNR NGKSCRLRWL  60
NYLRPGLRRG SISPEEDMVI RELHSRLGNK WAEIAKHLPG RTDNEVKNYW RTRAKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-291211623126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL. Acts redundantly with MYB24 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB24 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:11967090, ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3755161e-151AK375516.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3096J04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161957.15e-78myb-related protein 340-like
SwissprotQ9LK954e-54MYB21_ARATH; Transcription factor MYB21
TrEMBLM8A6S26e-79M8A6S2_TRIUA; Transcription factor MYB21
TrEMBLM8C0C22e-77M8C0C2_AEGTA; Transcription factor MYB21
STRINGEMT276644e-78(Aegilops tauschii)
STRINGTRIUR3_25064-P11e-79(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-56myb domain protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Su Z, et al.
    Flower development under drought stress: morphological and transcriptomic analyses reveal acute responses and long-term acclimation in Arabidopsis.
    Plant Cell, 2013. 25(10): p. 3785-807
    [PMID:24179129]
  3. Liu Z, et al.
    A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
    Mol Plant, 2015. 8(12): p. 1751-65
    [PMID:26388305]
  4. Chen X,Huang H,Qi T,Liu B,Song S
    New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis.
    Plant Signal Behav, 2016. 11(2): p. e1135280
    [PMID:26829586]
  5. Huang H, et al.
    Arabidopsis MYB24 Regulates Jasmonate-Mediated Stamen Development.
    Front Plant Sci, 2017. 8: p. 1525
    [PMID:28928760]