PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25143-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 818aa    MW: 93708.1 Da    PI: 4.7994
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25143-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.71.1e-2496183291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       Y+eY++++GFsvrk k+++ + ++ i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+p
  TRIUR3_25143-P1  96 LYCEYGHRMGFSVRKGKQYYFTGTKVIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELVP 183
                      7*****************************************9988..9999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-2296183IPR004330FAR1 DNA binding domain
PfamPF105514.1E-30294388IPR018289MULE transposase domain
PROSITE profilePS509669.656575611IPR007527Zinc finger, SWIM-type
PfamPF044341.2E-5577604IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-7586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    Send to blast
EMEGTSVPIE IDGDAICLEN VGDDEREAQE SEQVQIIYAT ENGAQVAFDS QEQGTEEHSV  60
RSEEEQENNS VIPSREEFTE ELRTKVAYSE EQAYRLYCEY GHRMGFSVRK GKQYYFTGTK  120
VIRTKDYYCS KEGLKDDEQL TEANFNKPET RTNCKAMVRF RVDSEGQWRV IQIIPEHNHE  180
LVPPEEIHLL RSVRILSIPK PGTLNAMVNA EIQSMHDSLH VHDDGAECHS QVSIQSYALL  240
EPEDAEALVG YLKRRTIEQG MFYWDVQVDQ EGQMTNFFWR DGRSRVDYDC FGDVVVFDTS  300
YRTNKYNMIC APFVGINHHM QNVMFGCAFM LDESLTSYEW LLKSFLESMG GCPPKTIFTD  360
QNDTISKAIE VILPETCHCL CQWHIEKNLQ AHLDTPNASG TFHSMFMKCM KDCESETEFE  420
ETWAMMLQEH NLQDDQWLTD LFEQRHKWCT ALHKVAFDCG IRSLDRNFSS DNVLGSIADE  480
STSPTNFALE FDKLVGSWRT NESVDDIQCK QISPECSVKQ NSILQHAAEV YTHKVYKSLE  540
TEFLDGCSGT SYQEMQCSET LYRFEFIMQS SPKVWVVFLD TSTMELSCSC KKFEMMGILC  600
SHALNALGLK NLDKIPESYV LKRWTKYVRK GTYVFPSDQS PEQDCTEAVL AYRNRAMWFV  660
YDLLMKSKGH QDTRKLILDV LENGEKSLES VCELKRMHIH PSGKDKDASK AEKRKKKLSK  720
QDKNSRNVKQ VVLPPPAESV FVDQPNQNQY FATEDIATNS SIGRPFFYQE YPATGVSASQ  780
IEGHANIHSV PQCAPAPQEF PAYDAVHPPS TFGGESNF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3584850.0AK358485.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1077H06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179689.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLT1N4200.0T1N420_TRIUA; Uncharacterized protein
STRINGTRIUR3_25143-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-80FAR1-related sequence 5