PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25675-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 342aa    MW: 37487.4 Da    PI: 6.1995
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25675-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.2e-082432762154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  TRIUR3_25675-P1 243 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 276
                      579*****************************87 PP
2ELK27.56.9e-10197218122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L++++++++g++++E++
  TRIUR3_25675-P1 197 ELKIELKQGFKSRIGDVREEIL 218
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012565.6E-593138IPR005541KNOX2
PfamPF037911.7E-6108137IPR005541KNOX2
PROSITE profilePS512139.289197217IPR005539ELK domain
PfamPF037892.4E-6197218IPR005539ELK domain
SMARTSM011880.0049197218IPR005539ELK domain
PROSITE profilePS5007111.71217280IPR001356Homeobox domain
SMARTSM003894.2E-10219284IPR001356Homeobox domain
SuperFamilySSF466895.99E-16219284IPR009057Homeodomain-like
CDDcd000864.78E-11220281No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24224283IPR009057Homeodomain-like
PfamPF059209.3E-18237276IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSQEGSQQVV AQEIHQQRQR QAAEEALSLL RVAGRLGGGG LPFPGEALVR LEAEAKRLRV  60
LAPKAPCVGL RRGSLPKPSS ELAMAGEGEG LGGSGGNMER KEHKCGLREQ LQQHVRVHAV  120
EAVMACREIE QSLQDLTGAS LEEGTGATMS EDEDEGPPMI MEAAPMDMSS NGHDMMGFGP  180
LVPTDTERSL MERVRQELKI ELKQGFKSRI GDVREEILRK RRAGKLPGDT TTILKQWWQE  240
HAKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHN NSQTSTLKSK RKSPAEGGRN  300
QVGETNQVEG MNCPGPGGNL LAGTLPVGSL ELAAVGNPEL EE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695360.0AK369536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2093A15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184577.11e-134homeobox protein knotted-1-like 3
SwissprotQ94LW31e-122KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLT1N5I00.0T1N5I0_TRIUA; Uncharacterized protein
STRINGTRIUR3_25675-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-107KNOTTED-like homeobox of Arabidopsis thaliana 7