PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26103-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 322aa    MW: 34878.6 Da    PI: 9.3968
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26103-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.24.7e-32271182102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+++++e++ ++e+isw e+g+sfvv+++ e+a+++Lp +Fkh nf+SFvRQLn+YgF+kv  ++         weF++++F++g++ ll+
  TRIUR3_26103-P1  27 FLTKTHQMVEERGTDEVISWGEQGRSFVVWKPVELARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANENFRRGEQGLLS 111
                      9*****************************************************************99.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                       i+r+k 
  TRIUR3_26103-P1 112 GIRRRKA 118
                      *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.2E-5323116IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.6E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.24E-3123116IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.5E-2827116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-172750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-176577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-177890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAGAAAQQQQ QKGGGAVRVG GGGPAPFLTK THQMVEERGT DEVISWGEQG RSFVVWKPVE  60
LARDLLPLHF KHCNFSSFVR QLNTYGFRKV VPDRWEFANE NFRRGEQGLL SGIRRRKATA  120
TTTTPQSSKT SGTGVNVAFP PPLPALRPAS ASTSGTGNDH SSSSASSPTR PDLSSENEQL  180
RKDNHALAAE LALARRHCEG TLGSTVVGRL EDGALLLVVD QITHIKAVFL LLFARHTLHI  240
GSEELRLCDT WNIGEAQAVF LLLFAGHKLH IGSEEFRLCN ALNIGEAQVG PRLAEPPSHK  300
VVLAGGELRR VISVEPRLLL VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-19121169129Heat shock factor protein 1
5d5v_B1e-19121169129Heat shock factor protein 1
5d5v_D1e-19121169129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085490.0KF208549.1 Triticum aestivum heat shock factor B1b (HsfB1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177659.11e-103heat stress transcription factor B-1-like
SwissprotQ67TP99e-83HSFB1_ORYSJ; Heat stress transcription factor B-1
TrEMBLM7YQN60.0M7YQN6_TRIUA; Heat stress transcription factor B-1
STRINGTRIUR3_26103-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-44heat shock factor 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Grand X, et al.
    Identification of positive and negative regulators of disease resistance to rice blast fungus using constitutive gene expression patterns.
    Plant Biotechnol. J., 2012. 10(7): p. 840-50
    [PMID:22607456]