PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26157-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 747aa    MW: 82837.4 Da    PI: 5.9983
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26157-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12564611355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      ++h + ErrRR+++N+ f  L++l+P+        K++Ka+iL +++ Y+++L+
  TRIUR3_26157-P1 564 KNHVISERRRREKLNEMFLILKSLVPSiH------KVDKASILAETITYLRELE 611
                      6899***********************66......****************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048277.0E-1178119IPR006912Harbinger transposase-derived protein
PfamPF142155.6E-51180385IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.298561610IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16563620IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10564611IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-15564615No hitNo description
Gene3DG3DSA:4.10.280.101.3E-16565620IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-15567616IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MAAMTMLAYG TTPDSTNASR WLKFCYCCGQ GVFGLMYLTE PNAADTRKLM EIEESKWFPG  60
LTMTSTCHNG LHYLQSCGRS LYMHYTINDH AYNMGYYLYD GIYPPWVTFI KTISKPRGRV  120
SLGVVDVDYS APIGPTNDLP RHLTVKQKSE GNSVVMALPV VRPCQEEPTL PPPTGTQFSN  180
QLAAAVRSIN WSYAIFWSIS TSRPGVLTWK DGFYNGEIKT RKVTSSADIT ADQLVLQRSE  240
QLRELYESLL SGQCDHRARR PAAALSPEDL GDAEWYYTVC MGYAFRPGQG LPGRSFASNE  300
HVWLCNAQCA DTKTFQRALL AKLLLTNIMM STMYGAHACY LCRLNQTASI QTVACIPLMG  360
GVLELGTTNT VLEDKGMVNW IGTSFWELKF PTCSKSEEPN SIPSVDDTGD ADIVFDVLNH  420
NTMAMMIPGE LELGEVECLS DDNLERITKE INGFYGLYDE LDVGALEENW TMGGYFEIMS  480
SPEVPPAPAA TNGITNGAVT LSSVEPSRSS CFTAWKRSWD SAEDMATLVA RETQKLLKKA  540
LAGGAWENNG GNDTARAQES TNTKNHVISE RRRREKLNEM FLILKSLVPS IHKVDKASIL  600
AETITYLREL EQKVEELGSN RAARTTAVRK RHEVGGKKVL ARSKRKASEL GGDDTERVLP  660
KDDGLSSVIN VTVTDNEVLL EVQCRWKELL MTQVFDAIKS LRLDVLSVRA STPDDLLALK  720
IRAQFAGPGV VETGMISEAL QRAIRRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-1219038523192Transcription factor MYC3
4rqw_B1e-1219038523192Transcription factor MYC3
4rs9_A1e-1219038523192Transcription factor MYC3
4yz6_A1e-1219038523192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569574ERRRRE
2570575RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7479540.0KJ747954.1 Triticum aestivum MYC-like regulatory protein (Myc1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177997.10.0anthocyanin regulatory R-S protein-like
RefseqXP_020177998.10.0anthocyanin regulatory R-S protein-like
SwissprotP130270.0ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLM8AJ640.0M8AJ64_TRIUA; Anthocyanin regulatory R-S protein
STRINGTRIUR3_26157-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-78bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]