PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26432-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 215aa    MW: 23516.4 Da    PI: 8.6727
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26432-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.17e-1996150256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++t eq   Lee F+ ++ +s+ e+ +LA++lgL+ rqV vWFqNrRa+ k
  TRIUR3_26432-P1  96 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTK 150
                      778899***********************************************98 PP
2HD-ZIP_I/II1131.9e-3696181186
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                      +kk+rl+ eq++lLEesF++++ L++ +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e
  TRIUR3_26432-P1  96 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRRELAE 181
                      69*******************************************************************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-1877150IPR009057Homeodomain-like
SuperFamilySSF466892.31E-1879153IPR009057Homeodomain-like
PROSITE profilePS5007117.26592152IPR001356Homeobox domain
SMARTSM003899.3E-1694156IPR001356Homeobox domain
CDDcd000864.89E-1396153No hitNo description
PfamPF000463.2E-1696150IPR001356Homeobox domain
PRINTSPR000313.5E-6123132IPR000047Helix-turn-helix motif
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6132148IPR000047Helix-turn-helix motif
SMARTSM003402.2E-12152193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEESQEVEEL VDTRLSLVIG AASRPPPTVL ALLPAASPEN EAAARGKRKG VKGPENGAGG  60
AAAASREHSK RAKTVHDSSD VDDDDRGDAA GGDGTRKKLR LTVEQAALLE ESFRAHNVLS  120
HGEKHDLARQ LGLKPRQVEV WFQNRRARTK LKQTELDCEL LRRWCERLSD DNARLRRELA  180
ETLSSSPAFL SRLTMANDKA VCSSCNKLTS ARMPG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100TRKKLRL
2144152RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189357.11e-129putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX65e-44HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A3B6NM331e-153A0A3B6NM33_WHEAT; Uncharacterized protein
TrEMBLA0A446V7H81e-153A0A446V7H8_TRITD; Uncharacterized protein
TrEMBLM7YW671e-153M7YW67_TRIUA; Putative homeobox-leucine zipper protein HOX26
STRINGTraes_6AS_3E534A2C1.11e-153(Triticum aestivum)
STRINGTRIUR3_26432-P11e-154(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.13e-36homeobox protein 2