PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26625-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 251aa    MW: 27066.3 Da    PI: 8.6228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26625-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13180225655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  TRIUR3_26625-P1 180 SIAERVRRTRISERIRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 225
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.326174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-16177233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.25E-14178229No hitNo description
Gene3DG3DSA:4.10.280.101.4E-15179244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10180225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-14180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDSATAGGAS SLLRQSSSPA GFLNHLNMDN GYESMLRQGM GVGFRNGAAN AAAVDSSGSR  60
LKGQLSFSSR QGSLMSQISE MGSEDLGGSS PEGAGGSRGY IPGYPMSSGW EESSLMSENM  120
SGMKRPRDSS EPAAQNGLAH QFSLPKTSSE MAAIEKFLQF QDAVPCKIRA KRGCATHPRS  180
IAERVRRTRI SERIRKLQEL VPNMDKQTNT ADMLDLAVDY IKELQEQVKV INESRANCTC  240
SASKHQQQYS G
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546340.0AK354634.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009F18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174831.11e-161transcription factor bHLH130-like
SwissprotQ66GR34e-63BH130_ARATH; Transcription factor bHLH130
TrEMBLT1N8350.0T1N835_TRIUA; Uncharacterized protein
STRINGTRIUR3_26625-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-54bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]