PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26732-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 200aa    MW: 21359.5 Da    PI: 4.4937
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26732-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1426.1e-44218291274
             GRAS  91 lkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                      l+f+++ta qa+l++++ +  +++H+iDfd++ G+QW+++lq+La R+       p l++T+++s +s++  el+ t+++L++fA+ lg+pfef
  TRIUR3_26732-P1   2 LQFANFTATQALLDEIACSaaSCIHVIDFDLGVGGQWASFLQELAHRRgtggVALPLLKLTAFVSDASHHPLELHLTQDNLTQFAADLGIPFEF 95 
                      89************988776699************************976544599************************************** PP

             GRAS 179 nvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                      n++   +l+++++ eL   + +E +aV+l +          +l+     +L+lvk+l Pk+vv ++  ad+ + +F ++fl++++ ++ l+dsl
  TRIUR3_26732-P1  96 NAV---SLDAFSPAELISPTgDEIVAVSLPVGCSARA---PPLAV----ILRLVKQLGPKIVVAMDYGADRADLPFSQHFLHCFQSCMFLLDSL 179
                      **8...99********666689********9777665...55555....********************************************* PP

             GRAS 272 eak 274
                      +a 
  TRIUR3_26732-P1 180 DAA 182
                      553 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.1631200IPR005202Transcription factor GRAS
PfamPF035142.1E-412182IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MLQFANFTAT QALLDEIACS AASCIHVIDF DLGVGGQWAS FLQELAHRRG TGGVALPLLK  60
LTAFVSDASH HPLELHLTQD NLTQFAADLG IPFEFNAVSL DAFSPAELIS PTGDEIVAVS  120
LPVGCSARAP PLAVILRLVK QLGPKIVVAM DYGADRADLP FSQHFLHCFQ SCMFLLDSLD  180
AAGIDADSAC SYHDVHTLLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719460.0AK371946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143M04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185793.11e-128scarecrow-like protein 6
TrEMBLM7YZX01e-141M7YZX0_TRIUA; Uncharacterized protein
STRINGTRIUR3_26732-P11e-142(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.12e-39GRAS family protein