PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26880-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 166aa    MW: 18205.8 Da    PI: 6.2759
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26880-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-131764355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     + h  +ErrRR+++ ++f  L +++P +     kK++Ka++L  A++Y+k Lq
  TRIUR3_26880-P1 17 QDHILAERRRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 64
                     67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8911463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-101764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-161870IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-161867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-121966No hitNo description
SMARTSM003533.5E-142069IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAAEPARAPS RPAAQNQDHI LAERRRREKL SERFIALSKI VPGLKKMDKA SVLGDAIKYV  60
KTLQEQDDGS SCDENFEGAD AGLPEIEARM SDRTVLVKIH CENRRGVLVA ALSELESIDL  120
AIMNTNVLPF TASSIDITIM ATAGEDFSLS VKDIVRKLHQ AFKSSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12227ERRRRE
22328RRRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675911e-144AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152395.11e-109transcription factor bHLH18-like
SwissprotQ9T0724e-42BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A446R7K81e-117A0A446R7K8_TRITD; Uncharacterized protein
TrEMBLM7Z9Y71e-117M7Z9Y7_TRIUA; Transcription factor bHLH25
STRINGTRIUR3_26880-P11e-118(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-43bHLH family protein