PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_26921-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 212aa MW: 22913.1 Da PI: 9.7492

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_26921-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.3	3.1e-09	33	82	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ E+ RR+r+N ++L +l+Pk ++++ ++ L A YIk+L TRIUR3_26921-P1 33 KKDSEKERRQRMNGLCDKLASLIPKEHNPHADTMTQLGSLDVAASYIKML 82 5778*******************75777777*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.544	28	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.26E-6	33	86	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-11	33	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.4E-7	33	82	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-6	34	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-10	35	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAVTAKPARG GKRTRASSGA AGATATTAVL TEKKDSEKER RQRMNGLCDK LASLIPKEHN 60 PHADTMTQLG SLDVAASYIK MLKERVDELQ HKKTSAQAMA TLQGVSGISI PSTTSSGAGS 120 PEREKYLEAS APVVQVRRTD DSSMEVRMIC STEKPIKLHE VITILEEEGA DIINANHSVV 180 GHKIFYTIHF RAFSNRIGID DSRISGRLGA LV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020190835.1	1e-116	uncharacterized protein LOC109776586
TrEMBL	M7XLV9	1e-154	M7XLV9_TRIUA; Uncharacterized protein
STRING	TRIUR3_26921-P1	1e-155	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	9e-15	bHLH family protein