PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26966-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 135aa    MW: 14631.2 Da    PI: 4.5823
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26966-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS82.66.6e-2611026107
             GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlta 98 
                      +ecA+av++++ +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++++  +++  + l f+e+sP+  f+h++a
  TRIUR3_26966-P1   1 MECARAVATRESQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAATDRNTS-FDSTRRTALrFQELSPWSSFGHVAA 93 
                      69*********************************************************999998544.4444444446*************** PP

             GRAS  99 NqaIleave 107
                      N aIle++ 
  TRIUR3_26966-P1  94 NGAILESFL 102
                      ******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.3E-231102IPR005202Transcription factor GRAS
PROSITE profilePS5098520.391135IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MECARAVATR ESQRVQQLMW MLNELASPYG DVEQKLASYF LQGLFARLTA SGPRTLRTLA  60
AATDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEAAAASSE PQSVGVHDAD  120
ASDEGGDTEA AFLKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-38110038139Protein SHORT-ROOT
5b3h_E1e-38110038139Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709791e-168AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.11e-70protein SHORT-ROOT 1
SwissprotQ8H2X81e-65SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLM7YZT12e-93M7YZT1_TRIUA; Uncharacterized protein
STRINGTRIUR3_26966-P14e-94(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-38GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]