PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26979-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 464aa    MW: 49583.9 Da    PI: 7.7742
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26979-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.7e-104975127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     +++++C +++rtG C yG++C+++H++
  TRIUR3_26979-P1 49 PGEANCVYYLRTGACGYGETCRYNHPR 75
                     57899********************96 PP
2zf-CCCH38.32.2e-1297123127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C +++++GtCk+G++Ck++H++
  TRIUR3_26979-P1  97 PGQPPCEYYMKNGTCKFGSNCKYNHPR 123
                      5899*********************96 PP
3zf-CCCH29.31.5e-09147168627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C+++ +tG+Ck+G++CkF+H++
  TRIUR3_26979-P1 147 CSYYIKTGHCKFGSTCKFHHPE 168
                      ********************96 PP
4zf-CCCH38.42.1e-12298324127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+++++tGtCk+G++Ck++H++
  TRIUR3_26979-P1 298 PGQPECHHYMKTGTCKFGSTCKYNHPQ 324
                      5789*********************97 PP
5zf-CCCH25.32.6e-08347369426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +C ++++ G+Ck+G+ CkF H+
  TRIUR3_26979-P1 347 QPCLYYSQHGFCKFGPGCKFDHP 369
                      69********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2914876IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-54875IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-75075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-45475IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.09396124IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-796123IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-1098123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-699124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5101124IPR000571Zinc finger, CCCH-type
SMARTSM003560.04141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-6145169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313146169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-4147168IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-6147168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197297325IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5297324IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-10299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6300324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.389343371IPR000571Zinc finger, CCCH-type
SMARTSM003569.9E-5343370IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-6345373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4347368IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-6347369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MMESYAASPK DGGAEGGRAD AATGLEESMW RLGLAGGEEA AGEGLPERPG EANCVYYLRT  60
GACGYGETCR YNHPRDRAAA FDGGTRTAHT VEYPERPGQP PCEYYMKNGT CKFGSNCKYN  120
HPREGGSVQP VVLNSCGYPL RLVGLFCSYY IKTGHCKFGS TCKFHHPEGP EHGVVSETPN  180
MYPPVQQLPV SSPLPYPPLA SWQLGRPSVL PGSFFPGSYP PMMHPSAVMP MQGWNPYMPP  240
INQVASAGGQ QTVQAGPLYG LSHQGPPSAV AYGSNYASLS SSTWPSSDKQ EVVFPERPGQ  300
PECHHYMKTG TCKFGSTCKY NHPQYLSTPR SNYMLSPLGL PIRPGAQPCL YYSQHGFCKF  360
GPGCKFDHPL GALSYSPSAS SLGDVPIAPY PLSLPVAPMA PSPLSSGLRP DYILAKDSSA  420
NQPASPGTTF GNAGQLSKIY APHMLLRPPT SATGATVTIH GGEF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3553790.0AK355379.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019O17.
GenBankAK3612940.0AK361294.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1137A21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020190679.10.0zinc finger CCCH domain-containing protein 5-like
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLM8ARI70.0M8ARI7_TRIUA; Zinc finger CCCH domain-containing protein 5
STRINGTRIUR3_26979-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-108C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]