PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27077-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11611.6 Da    PI: 11.7913
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27077-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF755.9e-241160251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rien + rq  fskRr g++KKA+EL  LCd+ev++++fs+ g++yey+s
  TRIUR3_27077-P1 11 RIENRTSRQGRFSKRRSGLFKKAFELALLCDTEVSLLVFSPAGRFYEYAS 60
                     8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-29261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.684262IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-25465IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-25424IPR002100Transcription factor, MADS-box
PfamPF003194.9E-221158IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-252439IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-253960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MARRGRVELR RIENRTSRQG RFSKRRSGLF KKAFELALLC DTEVSLLVFS PAGRFYEYAS  60
SSLCAVRVFG SSKALLLRPH SSPVIGYERV VKAAACKMQR RQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5123661e-86DQ512366.1 Triticum aestivum MADS-box transcription factor TaAGL33 (AGL33) mRNA, complete cds.
GenBankHG6703061e-86HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147090.13e-32MADS-box transcription factor 51-like
SwissprotQ9XJ619e-30MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLM7ZZU84e-66M7ZZU8_TRIUA; MADS-box transcription factor 56
STRINGTRIUR3_27077-P18e-67(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-25AGAMOUS-like 20
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]