PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_27402-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

YABBY

Protein Properties

Length: 138aa MW: 15413.5 Da PI: 9.3128

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27402-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	121.8	1e-37	57	111	116	170
YABBY 116 irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl TRIUR3_27402-P1 57 GPAPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 111 3459*************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-36	54	111	IPR006780	YABBY protein
SuperFamily	SSF47095	2.49E-8	56	105	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-5	60	105	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MILNIPDAAA IVVLPKGECP WEQHAQHCDS PVWALHKPTF REPERADALT SPSRTTGPAP 60 EKRQRVPSAY NRFIKEEIRR IKANNPDISH REAFSTAAKN WAHYPNIHFG LNPERDGGKR 120 LAVDDAAPAA KKIQGFCS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009106	1e-120	BT009106.1 Triticum aestivum clone wkm2n.pk008.p10:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201583.1	3e-52	protein YABBY 6-like
Swissprot	Q2QM17	2e-40	YAB6_ORYSJ; Protein YABBY 6
TrEMBL	M8A0W7	5e-98	M8A0W7_TRIUA; Protein YABBY 6
STRING	TRIUR3_27402-P1	8e-99	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-32	YABBY family protein