PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27404-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 627aa    MW: 68639.4 Da    PI: 8.7188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27404-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.44.1e-12298324127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+ff +tG+Ck+G++CkF+H++
  TRIUR3_27404-P1 298 PGEPNCPFFVKTGECKFGSKCKFNHPK 324
                      5789*********************96 PP
2zf-CCCH25.13e-08372392425
                      ---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                      ++C+++a+ G Ck G +CkF+H
  TRIUR3_27404-P1 372 KPCPHYAK-GKCKLGTNCKFIH 392
                      59******.************* PP
3zf-CCCH27.26.8e-09446472127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C+f+ +tG C yG +C+F+H++
  TRIUR3_27404-P1 446 PGEVDCSFYIKTGSCMYGRTCRFNHPE 472
                      57899********************96 PP
4zf-CCCH33.28.8e-11516540226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++  C+f+ +tG+Ck+ ++CkF+H+
  TRIUR3_27404-P1 516 GETVCDFYKKTGFCKFSEKCKFHHP 540
                      6789********************9 PP
5zf-CCCH38.42e-12573596427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      e C ++++tG Ck+G +CkF H+p
  TRIUR3_27404-P1 573 EACAYYMKTGACKFGVQCKFDHPP 596
                      78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-6297324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.478297325IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9299324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5302325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4303322IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-4369394IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859369395IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5372394IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5372392IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-4445472IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385445473IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5447472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5449473IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4451472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6513542IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-6514541IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164514542IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-8516540IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5519540IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6569596IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.601569597IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-5572595IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4573594IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10573596IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MSGYPFYPYG RGGVGDDASA MSDYPFHPYG RGGVGDNAAA RYSSYEIDLI AARYAGDPSS  60
YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSDA FYSPNTMVKR PRLESSLPIY  120
PQRPGEKECA FYMRTRTCSI LIDGPDTVSN LSPLCLPPLK PKVLVTEERA GGDDAWVPMG  180
MLRRGGVLGG NQRGWSWNIR IWRCMGAPAA DWVEPAMAAG VAAGVLGRWK MDLHVGLIYL  240
LKNKYPHPSQ REKHIGLMSF ETTWQLYLVS FIPPKVYFAC LKLILQGTKA GESYPERPGE  300
PNCPFFVKTG ECKFGSKCKF NHPKKKDDRT VAGPGDKESL FSANSTLPVK PSEPCPESLI  360
SGNSTLPVKP SKPCPHYAKG KCKLGTNCKF IHAKDMEPPS SGGNESENTA TAEAAGHHGA  420
VHDSVSAKKL APVALEHNSK GMPIRPGEVD CSFYIKTGSC MYGRTCRFNH PERHIQASVV  480
PGEMLNPAVK FLPSFDFRVT HVPIEPEPIT YPQRPGETVC DFYKKTGFCK FSEKCKFHHP  540
VDRSAPDSIA KWEPSQQPVT LTVAGFPRRE DAEACAYYMK TGACKFGVQC KFDHPPLGEA  600
IAKVSKHGEG KEGGKKKVVG LSYVLEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516310.0AK251631.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf129b04, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200959.10.0zinc finger CCCH domain-containing protein 8 isoform X2
SwissprotQ5ZDJ61e-117C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLM7ZHK60.0M7ZHK6_TRIUA; Zinc finger CCCH domain-containing protein 8
STRINGTRIUR3_27404-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-80floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]