PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_27588-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 114aa MW: 12636.5 Da PI: 9.0521

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27588-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.8e-39	1	100	2	101
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 C+aCk++rrkC+++C+lapyfpa++p +f+n h+lFG +n+l++l+++ +e+r+d m+s++yeA+ara+dPv Ga+g++++ q++l+ + ael+ TRIUR3_27588-P1 1 CSACKHQRRKCTPGCPLAPYFPADKPGSFRNSHRLFGIKNILRFLTRAGPEKRDDCMKSILYEADARASDPVLGAYGLLQSHQRELALATAELV 94 ********************************************************************************************** PP DUF260 96 llkeel 101 +lke+l TRIUR3_27588-P1 95 ALKEQL 100 *99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.3E-36	1	97	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	23.971	1	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
CSACKHQRRK CTPGCPLAPY FPADKPGSFR NSHRLFGIKN ILRFLTRAGP EKRDDCMKSI 60 LYEADARASD PVLGAYGLLQ SHQRELALAT AELVALKEQL ELHGHAAQHR SAPD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-25	1	100	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-25	1	100	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638299.1	4e-37	LOB domain-containing protein 11
TrEMBL	A0A3B6EG92	1e-77	A0A3B6EG92_WHEAT; Uncharacterized protein
TrEMBL	T1NAQ7	2e-78	T1NAQ7_TRIUA; Uncharacterized protein
STRING	TRIUR3_27588-P1	4e-79	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15375	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-27	LOB domain-containing protein 22