PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_27720-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 182aa MW: 19370.7 Da PI: 4.6059

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27720-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	49.7	1.1e-15	56	109	46	99
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 k+lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq++ ++lk++la++++ TRIUR3_27720-P1 56 CKDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKEANELKVDLARARA 109 57899********************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.3E-13	57	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDYSNEATIT AAAQPYGRSM SPPSRVSSCS PPPVFPLMGN APSSPPTIVL SPGAACKDLP 60 ESSRADAVSS MVYEAEARLR DPVYGCAGTV CRLQKEANEL KVDLARARAD LLSIQAQHAN 120 LLALVCVEFA ANHRGDQQLH QPPPLGDQLN GIGGSGGGAM YQPLYDSDFD SAPWEEARQL 180 WT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137074	1e-59	AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence.
GenBank	AP014959	1e-59	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	1e-59	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020150584.1	1e-111	LOB domain-containing protein 1-like
TrEMBL	M7ZII3	1e-131	M7ZII3_TRIUA; Uncharacterized protein
STRING	TRIUR3_27720-P1	1e-132	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-24	LOB domain-containing protein 1