PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_27732-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YA

Protein Properties

Length: 193aa MW: 20937.7 Da PI: 10.1457

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_27732-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.2	4.3e-31	76	132	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQy++Il+RR +Rak+e+e++l k+rkpylheSRh+hA+rR+Rg+gGrF TRIUR3_27732-P1 76 DAPIYVNAKQYEGILRRRRARAKVERENQL-VKGRKPYLHESRHRHAMRRARGTGGRF 132 68**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.1E-34	74	135	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.172	75	135	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.4E-28	78	132	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.8E-24	78	100	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.8E-24	109	132	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MEHSATIALQ SPLPEYNSRF EFGPGPSMFS VANLPDVFQM SSGYPSAEQC YGLLTTYAMK 60 STPGGRLLLP LNATADAPIY VNAKQYEGIL RRRRARAKVE RENQLVKGRK PYLHESRHRH 120 AMRRARGTGG RFLNTKKEGN GKDAGGGGKR AEQIILGSTA LGCPSTSHYL FPENSGAGSQ 180 GSCDDGAPHM PVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	76	140	2	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	125	RHRHAMRRAR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT009063	0.0	BT009063.1 Triticum aestivum clone wds1f.pk002.p21:fis, full insert mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020182505.1	5e-78	nuclear transcription factor Y subunit A-10-like
Refseq	XP_020182506.1	5e-78	nuclear transcription factor Y subunit A-10-like
Refseq	XP_020182507.1	5e-78	nuclear transcription factor Y subunit A-10-like
TrEMBL	M7Z760	1e-140	M7Z760_TRIUA; Nuclear transcription factor Y subunit A-1
STRING	TRIUR3_27732-P1	1e-141	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2307	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.3	5e-24	nuclear factor Y, subunit A10