PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27975-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HB-other
Protein Properties Length: 61aa    MW: 7371.9 Da    PI: 4.6441
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27975-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.71.9e-083332555
                     --HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
         Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRake 55
                     +++++ ++L ++l+++ + +k WF NrRa++
  TRIUR3_27975-P1  3 LDEDQHAHLGRELRVEPQHIKLWFNNRRAQM 33
                     789999***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.539136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-7332IPR009057Homeodomain-like
PfamPF000467.1E-6333IPR001356Homeobox domain
SuperFamilySSF466891.5E-6347IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MDLDEDQHAH LGRELRVEPQ HIKLWFNNRR AQMTRARHEQ VDNHLSDSEN DEIDSENDEI  60
H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM7YB156e-36M7YB15_TRIUA; Homeobox-leucine zipper protein ROC8
STRINGTRIUR3_27975-P11e-36(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3702333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.12e-09homeodomain GLABROUS 11