PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_27997-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 298aa    MW: 33485.9 Da    PI: 9.0963
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_27997-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox36.48.9e-121802082856
                      HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                      +++e LA kl+L  rqV vWFqNrRa+ k
  TRIUR3_27997-P1 180 KQKEALAIKLKLRPRQVEVWFQNRRARTK 208
                      799************************98 PP
2HD-ZIP_I/II85.28.8e-281802422789
      HD-ZIP_I/II  27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      ++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l+een+rL++eveeLr+
  TRIUR3_27997-P1 180 KQKEALAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSLTEENRRLQREVEELRA 242
                      89***********************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.0E-6112214IPR001356Homeobox domain
CDDcd000868.21E-8113211No hitNo description
Gene3DG3DSA:1.10.10.604.9E-14113138IPR009057Homeodomain-like
PROSITE profilePS5007111.758179210IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-14179216IPR009057Homeodomain-like
PfamPF000463.9E-9180208IPR001356Homeobox domain
SuperFamilySSF466891.5E-9180219IPR009057Homeodomain-like
PROSITE patternPS000270185208IPR017970Homeobox, conserved site
PfamPF021837.9E-9210243IPR003106Leucine zipper, homeobox-associated
SMARTSM003405.5E-21210253IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGATSPSGLE LTMAVPGLSS SSGSGVCLQQ QYQQQRWREH EGPGHEPAGE RRRGGGFPEW  60
GGGVCNNNIS NNGGGNMRDL DMNQPASGGE EEDFLMGGVE EDEEERGAGG PHRPKKLRLS  120
KEQSRLLEES FRLNHTLSPS TMRTLPWGRT TTDPLYVPFM GNQDKWYPPA HYSLLVALEK  180
QKEALAIKLK LRPRQVEVWF QNRRARTKLK HTEMECEYLK RCFGSLTEEN RRLQREVEEL  240
RAMRMAPPTV LSPHTRQPLP ASALTMCPRC ERVTAATCPR ITRPAASPFH PRRPSAAF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-146HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154762.11e-122homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-109HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-109HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLM7ZEX40.0M7ZEX4_TRIUA; Homeobox-leucine zipper protein HOX3
STRINGTRIUR3_27997-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.11e-51homeobox-leucine zipper protein 17