PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28119-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 439aa    MW: 50223.1 Da    PI: 7.1185
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28119-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.52.3e-25120215186
         trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdq 84 
                      +Wt ++v++Li+a ++++e+ ++++         +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ ++ ++++ +++d+
  TRIUR3_28119-P1 120 KWTGSMVKLLITAASYTGEDPGADQgvrrniaivQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGtACSVVENPALLDS 213
                      7*********************998888899999**********************************************559999******99 PP

         trihelix  85 le 86 
                      ++
  TRIUR3_28119-P1 214 MH 215
                      98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-18118241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEGSNLPTGN MMQGIPYSGM NVHGSSMQMH ATNSGKQLFN QSQMLGSFAM PINRATAPDN  60
PGFQFGEHEK KDHHHHHQQQ QHSHYYKNSI SDEEEHDMTE DVTDTQNDKG KKGSAWHRMK  120
WTGSMVKLLI TAASYTGEDP GADQGVRRNI AIVQKKGKWK AISKVMGERG CSVSPQQCED  180
KFNDLNKRYK RLTDILGRGT ACSVVENPAL LDSMHHLSDK MKEDARKILN SKHLFYEQMC  240
SYHNNNRVNL PEDLALQHSL QVALRCKDEH DLRRDASADP EEGDQSADSD YEEHDKEHQT  300
VHTNLRDSSM NKRMCHAVDH GDVGFVTSSS NGVSGRFNPH DITLDINNAI PGGANLSFVR  360
KDLTSQQIEL QKHRLQTQEQ KLEVAKQRLK WERFRMKKDR EIERMTLENE QMMLQQKRLE  420
LQLRHNELEL ELKGNANHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669360.0AK366936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174820.10.0uncharacterized protein LOC109760399
TrEMBLM7ZYZ60.0M7ZYZ6_TRIUA; Uncharacterized protein
STRINGTRIUR3_28119-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.19e-99sequence-specific DNA binding transcription factors