PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_28158-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 432aa MW: 45025.1 Da PI: 6.5143

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_28158-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	69.6	4.6e-22	186	238	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++p +s+gCp++k+vers++dp++++itY++eHnh+ TRIUR3_28158-P1 186 SDLWAWRKYGQKPIKGSPYPS-----SSKGCPARKQVERSRTDPNMLVITYTSEHNHP 238 699*************997.....599**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-22	179	240	IPR003657	WRKY domain
PROSITE profile	PS50811	25.545	180	240	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-19	183	240	IPR003657	WRKY domain
SMART	SM00774	2.1E-27	185	239	IPR003657	WRKY domain
Pfam	PF03106	1.2E-16	187	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 432 aa Download sequence Send to blast
MHAIVLGEAK EAKTSSSDGA GPSSADALGD PFSGLPDAFS TDYPSSSGSA AADFFDAVQD 60 AMGVGMAKQV GFVDTTGCGG GGTTAGAGGG FLDMRNHHMF PGEMPMRGLS PYALMGGGAA 120 KLGVPIAGHG LAAGPCAFDA VAGLQMSSSP RGGGIKRRKN QARKVVCIPA PAAAVAGKTT 180 GEVVPSDLWA WRKYGQKPIK GSPYPSSSKG CPARKQVERS RTDPNMLVIT YTSEHNHPWP 240 TQRNVLAGST RSHYAKNSSN TDAASSKNSK NSSRNQHKPV VKAESKDQSA ATPAATSTTT 300 TATTSTGNNT PPMAVKEEAE MERRIGGDTT ATVGYYSDHL LQQMFSQSYR PMMPEEAGGY 360 HQQDDFFADL TELDSDPVSL IFSTEYMEAR PGKEKAAAKD DVDSLFMMDW APASAAVTTS 420 AGSALEQGDM GL

Sequence ? help Back to Top

Protein Sequence Length: 432 aa Download sequence Send to blast

MHAIVLGEAK EAKTSSSDGA GPSSADALGD PFSGLPDAFS TDYPSSSGSA AADFFDAVQD  60
AMGVGMAKQV GFVDTTGCGG GGTTAGAGGG FLDMRNHHMF PGEMPMRGLS PYALMGGGAA  120
KLGVPIAGHG LAAGPCAFDA VAGLQMSSSP RGGGIKRRKN QARKVVCIPA PAAAVAGKTT  180
GEVVPSDLWA WRKYGQKPIK GSPYPSSSKG CPARKQVERS RTDPNMLVIT YTSEHNHPWP  240
TQRNVLAGST RSHYAKNSSN TDAASSKNSK NSSRNQHKPV VKAESKDQSA ATPAATSTTT  300
TATTSTGNNT PPMAVKEEAE MERRIGGDTT ATVGYYSDHL LQQMFSQSYR PMMPEEAGGY  360
HQQDDFFADL TELDSDPVSL IFSTEYMEAR PGKEKAAAKD DVDSLFMMDW APASAAVTTS  420
AGSALEQGDM GL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-18	159	241	2	80	Disease resistance protein RRS1
5w3x_D	3e-18	159	241	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368994	0.0	AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179949.1	0.0	probable WRKY transcription factor 35
Swissprot	O64747	7e-62	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	M7ZRA7	0.0	M7ZRA7_TRIUA; Putative WRKY transcription factor 35
STRING	TRIUR3_28158-P1	0.0	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-55	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]