PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28321-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 233aa    MW: 24068.2 Da    PI: 7.8374
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28321-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.17.4e-302105199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++ +++l+q
  TRIUR3_28321-P1   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTSNWDLCQ 95 
                      6*********************9999888899************************************************************** PP

           DUF260  90 lkaelallke 99 
                      ++ae++l+++
  TRIUR3_28321-P1  96 AAAEAVLRGD 105
                      ****998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7951107IPR004883Lateral organ boundaries, LOB
PfamPF031955.2E-242101IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006807Biological Processnitrogen compound metabolic process
GO:0060776Biological Processsimple leaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAAEA VLRGDSLRSL SAVPAAFTER  120
DMAGLYGNVG TNTGSSSSLH SSPENSTSAP ARKRSKNSPG CGAVGGQQQV KLPGPGPVLQ  180
SCELDLCLTP LSSPLAGGRR GGASDEYSTT TCCEEASGDA AEAGAPPRLN LFN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666860.0AK366686.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045L18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020177395.11e-152LOB domain-containing protein 39-like
TrEMBLM7ZL421e-168M7ZL42_TRIUA; Uncharacterized protein
STRINGTRIUR3_28321-P11e-169(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.13e-55LOB domain-containing protein 37