PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28462-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24216.3 Da    PI: 9.8094
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28462-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-1895150156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rrk+ ++tkeq   Le  F+ ++ + + +++eLA++l+L+ rqV vWFqNrRa+ k
  TRIUR3_28462-P1  95 RRKKLRLTKEQCALLEGSFRAHNILPHVQKQELARQLNLSSRQVEVWFQNRRARTK 150
                      79999*************************************************98 PP
2HD-ZIP_I/II112.92.1e-3696184189
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                      +kk+rl+keq +lLE sF++++ L + +K+elar+L+l+ rqv+vWFqnrRARtk+kq+E+d+e+L+r++++l++en+rL++e  eL++
  TRIUR3_28462-P1  96 RKKLRLTKEQCALLEGSFRAHNILPHVQKQELARQLNLSSRQVEVWFQNRRARTKLKQTEVDCEFLRRWCESLTHENQRLKHELLELQR 184
                      69***********************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1971153IPR009057Homeodomain-like
SuperFamilySSF466896.27E-2075153IPR009057Homeodomain-like
PROSITE profilePS5007117.32992152IPR001356Homeobox domain
SMARTSM003893.7E-1494156IPR001356Homeobox domain
CDDcd000864.27E-1395153No hitNo description
PfamPF000466.4E-1695150IPR001356Homeobox domain
PROSITE patternPS000270127150IPR017970Homeobox, conserved site
PfamPF021832.4E-9152183IPR003106Leucine zipper, homeobox-associated
SMARTSM003407.1E-14152195IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
SMERQDLGAW LGLATGGGAV WHTHDGERRP NHPVRLDELF PQHGKEERDQ DEQKTGGKGA  60
RRKMKVADDE GRSSSSNGPC PSDGGGSDGG GGGGRRKKLR LTKEQCALLE GSFRAHNILP  120
HVQKQELARQ LNLSSRQVEV WFQNRRARTK LKQTEVDCEF LRRWCESLTH ENQRLKHELL  180
ELQRSAAPPV AAGSKLFAQL PRAAAIMNLC PSCEKVAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100GRRKKLRL
2144152RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180166.11e-126homeobox-leucine zipper protein HOX18-like
RefseqXP_020181275.11e-126homeobox-leucine zipper protein HOX18-like
SwissprotQ5Z6F69e-59HOX18_ORYSJ; Homeobox-leucine zipper protein HOX18
TrEMBLT1ND421e-158T1ND42_TRIUA; Uncharacterized protein
STRINGTRIUR3_28462-P11e-159(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81303448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-41homeobox from Arabidopsis thaliana