PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28638-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 236aa    MW: 25177.2 Da    PI: 5.1372
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28638-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-08133173954
                      HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  TRIUR3_28638-P1 133 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 173
                      69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-11130178No hitNo description
SuperFamilySSF474591.11E-13130184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12130179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-11132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-5133173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MDPSGGKMDP GFCNDMILSE SAWNSGGGDG GAAGDVVNVV DGSGMTVLER LVLDEALAAA  60
IMELQGIQRT KPSLSSTSSS ISFDGRSSVN NGWGIYRAAA MRPVSLGVEE EDTGERPSRR  120
NVRISSDPQT VAARQRRERI SERLRVLQKL VPGGAKMDTA SMLDEAANYL RFLKSQIREL  180
QTLDRRNYGA NAISNTGMAP LMSYNNMPAF AFPATGAGET LGGGGGEEAF MSSRFR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133138RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201013.13e-85transcription factor SPATULA-like isoform X1
RefseqXP_020201014.13e-85transcription factor SPATULA-like isoform X2
TrEMBLM7YV241e-170M7YV24_TRIUA; Transcription factor bHLH87
STRINGTRIUR3_28638-P11e-170(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.11e-28bHLH family protein