PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28704-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 666aa    MW: 73185.6 Da    PI: 6.3118
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28704-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.8e-2285185198
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f+k+ltpsd++++g +++ +++a+e+       ++ + +++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++
  TRIUR3_28704-P1  85 FCKILTPSDTSTHGGFSVLRRHANEClppldmAMP-TPTQEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAFVYL--RSE 175
                      99****************************97444.44569*********************************************999..447 PP

                      EE..EEEEE- CS
               B3  89 efelvvkvfr 98 
                      ++e +v+v+r
  TRIUR3_28704-P1 176 TGEQRVGVRR 185
                      7778999997 PP
2Auxin_resp95.86.5e-32211292183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a+ha +t+s+F v+Y+Pr s+s+++v+v+k+++a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  dl+p +W++S+W+sLk
  TRIUR3_28704-P1 211 ASHARKTNSIFVVYYRPRLSQSQYIVSVNKYLQASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDLSP-QWSGSEWKSLK 292
                      68999******************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-3673213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-3578200IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-2085185IPR003340B3 DNA binding domain
PROSITE profilePS5086311.27985187IPR003340B3 DNA binding domain
CDDcd100174.33E-1785185No hitNo description
SMARTSM010198.7E-1885187IPR003340B3 DNA binding domain
PfamPF065072.0E-27211292IPR010525Auxin response factor
PfamPF023095.5E-7547599IPR033389AUX/IAA domain
SuperFamilySSF542772.51E-9562635No hitNo description
PROSITE profilePS5174523.355562642IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2407.6E-4564623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAQPGERSLL LQEPTDSALL AEQIKMFQVP YKILCKVVNV ELKAEAETDE GYAQITLQPE  60
SDQDNLPLIC DPILPETPRP VVHTFCKILT PSDTSTHGGF SVLRRHANEC LPPLDMAMPT  120
PTQEIISKDL HGSEWRFKHI YRGQPRRHLL TTGWSTFVTS KKLMAGDAFV YLRSETGEQR  180
VGVRRLVQKQ STMPASVISS QSMHLGVLAS ASHARKTNSI FVVYYRPRLS QSQYIVSVNK  240
YLQASKTGFT VGMRFRMNFE AEDVPVKKFF GTIVGDGDLS PQWSGSEWKS LKVQWDDSVA  300
ICNGPERVSP WEIDSSDASS PAISALLQSS AKNKRPRETN ENFDLPSQEP TQEFWLSGMT  360
QQHERTYVGS SDPNRISGYH QILWPSSEPA GYGAMSSSSV CQTPLGLGDG WPKDFNPSSQ  420
GVSPTLSEIT QKLNRVASSE GRTPPPWATA LCGGYRAEEP TSKLSCNPTL PLPEQVAPYL  480
PKVAEKAKEP GVVRLFGVNL MENTNNAAAP TAGNASAGAG ETSARVAGSV EGSGQLSAFS  540
KVTKVANESP REIQSQQSNV GRNRVKVQMH GNAVGRAVDL ASLDGYEGLT SELEQMFEIK  600
DIKQNFKVAF TDNEGDTMKV GDDPWMEFCR MVRKIVIYPI EDDKNMDPRQ TSVLAAAPDP  660
DPKANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1242032360362Auxin response factor 1
4ldw_A1e-1242032360362Auxin response factor 1
4ldw_B1e-1242032360362Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLM7YXA70.0M7YXA7_TRIUA; Auxin response factor
STRINGTRIUR3_28704-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-138auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]