PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIUR3_28753-P1

Organism

Triticum urartu

Taxonomic ID

4572

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 245aa MW: 25153.6 Da PI: 6.5029

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIUR3_28753-P1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	55	77	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H TRIUR3_28753-P1 55 YECVFCKRGFTTAQALGGHMNIH 77 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.45E-6	53	81	No hit	No description
PROSITE profile	PS50157	10.99	55	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	57	77	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MASGRNKEPK VGSGDEAASS AGPPGVAAAP PQGAEPGDDE AAAAVLAAAP TRPYYECVFC 60 KRGFTTAQAL GGHMNIHRRD RAKPSVRDAP SGTTTSASPN VECYNQYYSH CLPYPTVPPA 120 TATPMSTSGS FTLAYYQQQG TGNSTGVAHA DASVNPSSAS PRELSLFGAA ARDRDLHGGG 180 GDGSGVAPEG SDRQAVDGSE NNRITTDAKA SGISEFKFSN TQLGIFSGYT LQRPHGILTC 240 VPMAI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC145477	1e-32	AC145477.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1402B06, complete sequence.
GenBank	AP014961	1e-32	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187562.1	1e-138	uncharacterized protein LOC109773281
TrEMBL	M8AXP7	1e-178	M8AXP7_TRIUA; Transcriptional regulator TAC1
STRING	TRIUR3_28753-P1	1e-179	(Triticum urartu)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8111	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-13	C2H2 family protein