PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28766-P1
Organism
Triticum urartu
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 146aa    MW: 16693 Da    PI: 8.4692
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28766-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l + ++++G+g+W+++++  g+ R++k+c++rw +yl
  TRIUR3_28766-P1 14 RGLWSPEEDEKLMNHIAKYGNGCWSSVPKIAGLERCGKSCRLRWINYL 61
                     789*******************************************97 PP
2Myb_DNA-binding38.82.1e-1267103139
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                      rg++++eE++l+++++  lG++ W+ Ia+ ++ gRt+++
  TRIUR3_28766-P1  67 RGAFSQEEEDLIIHLHSILGNK-WSQIAAQLP-GRTDNE 103
                      89********************.*********.****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-26964IPR009057Homeodomain-like
PROSITE profilePS5129425.438965IPR017930Myb domain
SuperFamilySSF466894.31E-2811103IPR009057Homeodomain-like
SMARTSM007173.9E-131363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
CDDcd001677.31E-111761No hitNo description
Gene3DG3DSA:1.10.10.604.3E-1965103IPR009057Homeodomain-like
PROSITE profilePS5129411.42166121IPR017930Myb domain
SMARTSM007171.6E-566119IPR001005SANT/Myb domain
PfamPF002495.5E-1167103IPR001005SANT/Myb domain
CDDcd001671.00E-669103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSKRPGGTKK RLKRGLWSPE EDEKLMNHIA KYGNGCWSSV PKIAGLERCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIH LHSILGNKWS QIAAQLPGRT DNEPDEGYVE LHSQYELDSD  120
VGQDFAANIW RKWGVPINYK EGLAVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-231210225114MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3537851e-165AK353785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1002L23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154053.17e-69transcription factor MYB3-like
SwissprotQ8LPH61e-52MYB86_ARATH; Transcription factor MYB86
TrEMBLM7Z1701e-104M7Z170_TRIUA; Transcription factor MYB86
STRINGTRIUR3_28766-P11e-105(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.36e-57myb domain protein 55